Benilton, você conhece alguma biblioteca boa de C++ para trabalhar com cálculo diferencial e integral, alguma semelhante à GSL? Obrigado [ ], Pedro Rafael Diniz Marinho. Em 13 de agosto de 2012 16:09, Pedro Rafael <pedro.rafael.marinho@gmail.com> escreveu:
Eu rodei o programa em um ubuntu, instalei o cmake via apt-get e compilei o fonte do armadiilo. O programa rodou sem nenhum problema. Não sei porque no Fedora 17 ele não configurou o arquivo automaticamente. Eu compilei o programa no ubuntu usando: g++ -o programa programa.cpp -larmadillo.
Obrigado aí Benilton pela ajuda, Pedro Rafael Diniz Marinho.
Em 13 de agosto de 2012 15:32, beniltoncarvalho [via R-br] <ml-node+s2285057n4655857h44@n4.nabble.com> escreveu:
eh algum config...
Sent from a mobile device
On Aug 13, 2012 7:17 PM, "Pedro Rafael" <[hidden email]> wrote:
Vou tentar procurar qual o arquivo que devo fazer essa alteração que você me informou. Obrigado. [ ], Pedro Rafael Diniz Marinho.
Em 13 de agosto de 2012 05:53, beniltoncarvalho [via R-br] <[hidden email]> escreveu:
mais provavel vc nao ter habilitado LAPACK/BLAS durante a compilacao do Armadillo... ja' nao lembro exatamente o arquivo, mas ha' um q vc precisa modificar manualmente (caso esteja fazendo a instalacao manual) e deixar algo como
define ARMA_USE_LAPACK define ARMA_USE_BLAS
b
2012/8/13 Pedro Rafael <[hidden email]>:
Será que é alguma coisa com o sistema operacional? [ ], Pedro Rafael Diniz Marinho.
Em 12 de agosto de 2012 22:36, Pedro Rafael <[hidden email]> escreveu:
Tentei remover a biblioteca armadillo e instalar as dependências necessárias e no final reinstalei. [ ], Pedro Rafael Diniz Marinho.
Em 12 de agosto de 2012 22:34, Pedro Rafael <[hidden email]> escreveu: > Valeu Benilton. O problema da compilação n ocorre. Possivelmente as > bibliotecas necessárias estão instaladas. Ocorre erro na hora de > executar o programa. O erro é: > > error: det(): use of ATLAS or LAPACK needs to be enabled > terminate called after throwing an instance of 'std::logic_error' > what(): > Abortado (imagem do núcleo gravada) > > > [ ], > Pedro Rafael Diniz Marinho. > > > Em 12 de agosto de 2012 22:29, beniltoncarvalho [via R-br] > <[hidden email]> escreveu: >> auto correct fail >> >> -llapack -lblas >> >> Sent from a mobile device >> >> On Aug 13, 2012 2:11 AM, "Pedro Rafael" <[hidden email]> wrote: >>> >>> Olá Benilton, como vai? O programa que estou testando é bem >>> simples. >>> Na verdade a matriz é pequena, 5 por 5. Veja: >>> >>> #include<iostream> >>> #include"armadillo" >>> >>> using namespace arma; >>> >>> int main() >>> { >>> mat A = randu<mat>(5,5); >>> double x = det(A); >>> return 0; >>> } >>> >>> Compilei como você me indicou e obtive o seguinte erro. >>> >>> /usr/include/armadillo_bits/compiler_setup.hpp:117:6: warning: >>> #warning "*** Detected GCC 4.7.0 / 4.7.1, which has a regression >>> (bug)" [-Wcpp] >>> /usr/include/armadillo_bits/compiler_setup.hpp:118:6: warning: >>> #warning "*** See http://gcc.gnu.org/bugzilla/show_bug.cgi?id=53549 >>> " [-Wcpp] >>> /usr/include/armadillo_bits/compiler_setup.hpp:119:6: warning: >>> #warning "*** A partial workaround for the bug has been activated, >>> " [-Wcpp] >>> /usr/include/armadillo_bits/compiler_setup.hpp:120:6: warning: >>> #warning "*** which reduces some functionality in fixed-size >>> matrices >>> " [-Wcpp] >>> /usr/bin/ld: cannot find -lapack >>> collect2: error: ld returned 1 exit status >>> >>> >>> [ ], >>> Pedro Rafael Diniz Marinho. >>> Em 12 de agosto de 2012 22:06, beniltoncarvalho [via R-br] >>> <[hidden email]> escreveu: >>> >>> > Vc precisa linkar p lapack blas >>> > >>> > g++ -O2 -lapack -lblas programa.cpp >>> > >>> > Obvio, não testado. Adicionalmente, p matriz grande vc deveria >>> > usar >>> > log_det. >>> > >>> > Sent from a mobile device >>> > >>> > On Aug 13, 2012 12:44 AM, "Pedro Rafael" <[hidden email]> wrote: >>> >> >>> >> Pessoal estou tendo um problema com a biblioteca armadillo no >>> >> linux >>> >> fedora. Quando vou calcular o determinante de uma matriz muito >>> >> pequena >>> >> funciona mas quando a minha matriz é grande ocorre o seguinte >>> >> erro: >>> >> >>> >> error: det(): use of ATLAS or LAPACK needs to be enabled >>> >> >>> >> Já instalei as bibliotecas cmake, blas-devel, lapack-devel, >>> >> atlas-devel, boost-devel mas o erro permanece. Alguém já teve >>> >> isso >>> >> ou >>> >> poderia dar uma dica de como corrigir esse problema? >>> >> >>> >> Obrigado, >>> >> Pedro Rafael Diniz Marinho. >>> >> >>> >> >>> >> Em 10 de agosto de 2012 23:58, Pedro Rafael >>> >> <[hidden email]> escreveu: >>> >> >>> >> > Não compreendi os exemplos. Vou dar uma lida maior e buscar >>> >> > mais >>> >> > coisas >>> >> > na net. >>> >> > >>> >> > Obrigado, >>> >> > Pedro Rafael Diniz Marinho. >>> >> > >>> >> > >>> >> > Em 10 de agosto de 2012 23:04, beniltoncarvalho [via R-br] >>> >> > <[hidden email]> escreveu: >>> >> >>> >> >> No básico do basico... Envolva sua função em um extern. Dai >>> >> >> use >>> >> >> o >>> >> >> .Call >>> >> >> >>> >> >> Sent from a mobile device >>> >> >> >>> >> >> On Aug 11, 2012 2:42 AM, "Pedro Rafael" <[hidden email]> >>> >> >> wrote: >>> >> >>> >>> >> >>> Interessante. Com o comando RcppArmadillo.package.skeleton é >>> >> >>> possível >>> >> >>> criar a estrutura de diretórios de um pacote R. Digamos que >>> >> >>> eu >>> >> >>> tenha >>> >> >>> um código C++ e queria arrumar ele para fazer um pacote para >>> >> >>> o >>> >> >>> R. >>> >> >>> Eu >>> >> >>> queria entender como se da essa comunicação. Só a filosofia >>> >> >>> mesmo. >>> >> >>> Eu >>> >> >>> entendo como criar um pacote do R utilizando o sistema de >>> >> >>> orientação à >>> >> >>> objeto S3 e sei que existe outras como S4 e R5. O que não >>> >> >>> consigo >>> >> >>> entender bem é como comunicar o código C/C++ com o R e como >>> >> >>> se >>> >> >>> dá a >>> >> >>> comunicação desses códigos (C/C++) com o R. Vi que posso >>> >> >>> chamar >>> >> >>> códigos do R para o C++ mas acho que o mais interessante é o >>> >> >>> contrário. Como chamar um código otimizado de C++ para R e >>> >> >>> criar >>> >> >>> um >>> >> >>> pacote caso seja conveniente. Alguém poderia me dar um >>> >> >>> exemplo >>> >> >>> com >>> >> >>> uma >>> >> >>> função bem simplória só para entender por alto como >>> >> >>> funciona? >>> >> >>> >>> >> >>> Obrigado, >>> >> >>> Pedro Rafael Diniz Marinho. >>> >> >>> >>> >> >>> >>> >> >>> Em 10 de agosto de 2012 22:23, beniltoncarvalho [via R-br] >>> >> >>> <[hidden email]> escreveu: >>> >> >>> >>> >> >>> > Sim. Mas antes de qualquer coisa, veja o pacote >>> >> >>> > RcppArmadillo >>> >> >>> > e >>> >> >>> > os >>> >> >>> > documentos de ajuda associados. b >>> >> >>> > >>> >> >>> > 2012/8/11 Pedro Rafael <[hidden email]>: >>> >> >>> > >>> >> >>> >> Uma última dúvida. É fácil integrar códigos C++ com o R? >>> >> >>> >> Utilizei >>> >> >>> >> as >>> >> >>> >> funções .C() e .Call() para chamar comandos em C para R. >>> >> >>> >> Nunca >>> >> >>> >> tentei >>> >> >>> >> utilizando C++. A construção de pacotes R feitos >>> >> >>> >> utilizando >>> >> >>> >> funções >>> >> >>> >> escritas em C++ também é tranquila? >>> >> >>> >> >>> >> >>> >> >>> >> >>> >> Obrigado, >>> >> >>> >> Pedro Rafael Diniz Marinho. >>> >> >>> >> >>> >> >>> >> >>> >> >>> >> Em 10 de agosto de 2012 22:04, Pedro Rafael >>> >> >>> >> <[hidden email]> escreveu: >>> >> >>> >>> Que legal Benilton, vou olhar bem esse pacote. Muito >>> >> >>> >>> obrigado >>> >> >>> >>> pelas >>> >> >>> >>> informações. Vou brincar um pouco com esse pacote. >>> >> >>> >>> Procurei na >>> >> >>> >>> web >>> >> >>> >>> outros pacotes de álgebra linear para C++ mas me parece >>> >> >>> >>> que >>> >> >>> >>> esse é >>> >> >>> >>> o >>> >> >>> >>> pacote livre mais completo. >>> >> >>> >>> [ ], >>> >> >>> >>> Pedro Rafael Diniz Marinho. >>> >> >>> >>> >>> >> >>> >>> >>> >> >>> >>> Em 10 de agosto de 2012 21:31, beniltoncarvalho [via >>> >> >>> >>> R-br] >>> >> >>> >>> <[hidden email]> escreveu: >>> >> >>> >>>> Se vc gostou do Armadillo, divirta-se com o pacote >>> >> >>> >>>> RcppArmadillo. >>> >> >>> >>>> b >>> >> >>> >>>> >>> >> >>> >>>> 2012/8/11 Pedro Rafael <[hidden email]>: >>> >> >>> >>>> >>> >> >>> >>>>> Obrigado Prof. Paulo pela informação, me ajudou >>> >> >>> >>>>> bastante. >>> >> >>> >>>>> Eu >>> >> >>> >>>>> gostei >>> >> >>> >>>>> muito Benilton da biblioteca de álgebra linear >>> >> >>> >>>>> "armadillo". >>> >> >>> >>>>> Muito >>> >> >>> >>>>> mais >>> >> >>> >>>>> fácil que a GSL. Eu acho desorganizado os códigos C. O >>> >> >>> >>>>> problema >>> >> >>> >>>>> que >>> >> >>> >>>>> quando escrevo algum código matemático em C++ sempre >>> >> >>> >>>>> tem >>> >> >>> >>>>> uma >>> >> >>> >>>>> estrutura >>> >> >>> >>>>> procedural, deve ser o vício que tenho do C. Acabo >>> >> >>> >>>>> usando >>> >> >>> >>>>> quase >>> >> >>> >>>>> nada >>> >> >>> >>>>> de Classes, Heranças, Polimorfismo, etc. Contudo, acho >>> >> >>> >>>>> interessante >>> >> >>> >>>>> a >>> >> >>> >>>>> facilidade de se trabalhar com vetores, matrizes e >>> >> >>> >>>>> alocação >>> >> >>> >>>>> dinâmica >>> >> >>> >>>>> utilizando C++. >>> >> >>> >>>>> [ ], >>> >> >>> >>>>> Pedro Rafael Diniz Marinho. >>> >> >>> >>>>> >>> >> >>> >>>>> >>> >> >>> >>>>> Em 10 de agosto de 2012 20:28, beniltoncarvalho [via >>> >> >>> >>>>> R-br] >>> >> >>> >>>>> <[hidden email]> escreveu: >>> >> >>> >>>>>> Pedro, >>> >> >>> >>>>>> >>> >> >>> >>>>>> Há muito deixei de procurar 'a linguagem mais >>> >> >>> >>>>>> <escolha o >>> >> >>> >>>>>> adjetivo> >>> >> >>> >>>>>> para <escolha a tarefa>'. Fico contente em usar >>> >> >>> >>>>>> qualquer >>> >> >>> >>>>>> linguagem >>> >> >>> >>>>>> que >>> >> >>> >>>>>> se mostre util e nao me force a reinventar a roda. >>> >> >>> >>>>>> Dito >>> >> >>> >>>>>> isso, >>> >> >>> >>>>>> nao >>> >> >>> >>>>>> vejo >>> >> >>> >>>>>> la essas diferencas entre C ou C++. E' obvio que >>> >> >>> >>>>>> algum >>> >> >>> >>>>>> especialista >>> >> >>> >>>>>> em >>> >> >>> >>>>>> alguma delas encontrara' inumeros casos que servem de >>> >> >>> >>>>>> contra-exemplo; >>> >> >>> >>>>>> mas enqto ele faz isso, eu sigo adiante resolvendo >>> >> >>> >>>>>> outros >>> >> >>> >>>>>> problemas. >>> >> >>> >>>>>> >>> >> >>> >>>>>> b >>> >> >>> >>>>>> >>> >> >>> >>>>>> 2012/8/10 Paulo Justiniano <[hidden email]>: >>> >> >>> >>>>>> >>> >> >>> >>>>>>> Pedro >>> >> >>> >>>>>>> >>> >> >>> >>>>>>> quando se diz em evitar inverter matrizes é porque >>> >> >>> >>>>>>> muitas >>> >> >>> >>>>>>> contas >>> >> >>> >>>>>>> podem >>> >> >>> >>>>>>> ser >>> >> >>> >>>>>>> feitas sem a inversao explícita >>> >> >>> >>>>>>> >>> >> >>> >>>>>>> Por exemplo, a conta >>> >> >>> >>>>>>> >>> >> >>> >>>>>>> X'V^{-1}X >>> >> >>> >>>>>>> >>> >> >>> >>>>>>> pode ser feita evitando inversao a partir da >>> >> >>> >>>>>>> cholesky >>> >> >>> >>>>>>> de V >>> >> >>> >>>>>>> que pode ser aproveitada de calculos anteriores uma >>> >> >>> >>>>>>> vez >>> >> >>> >>>>>>> que >>> >> >>> >>>>>>> já >>> >> >>> >>>>>>> deve >>> >> >>> >>>>>>> ter >>> >> >>> >>>>>>> sido >>> >> >>> >>>>>>> calculada antes para obter as estimativas >>> >> >>> >>>>>>> >>> >> >>> >>>>>>> No exemplo >>> >> >>> >>>>>>> >>> >> >>> >>>>>>> cV <- chol(V) >>> >> >>> >>>>>>> crossprod(backsolve(cV, X, transpose=T)) >>> >> >>> >>>>>>> >>> >> >>> >>>>>>> isto é ***muito*** mais rapido (compare com >>> >> >>> >>>>>>> system.time()) >>> >> >>> >>>>>>> do que >>> >> >>> >>>>>>> >>> >> >>> >>>>>>> t(X) %*% solve(V) %*% X >>> >> >>> >>>>>>> >>> >> >>> >>>>>>> >>> >> >>> >>>>>>> >>> >> >>> >>>>>>> >>> >> >>> >>>>>>> On Thu, 9 Aug 2012, Pedro Rafael wrote: >>> >> >>> >>>>>>> >>> >> >>> >>>>>>>> Com respeito a evitar de trabalhar com inversas de >>> >> >>> >>>>>>>> matrizes é >>> >> >>> >>>>>>>> fato >>> >> >>> >>>>>>>> mas >>> >> >>> >>>>>>>> infelizmente tenho que trabalhar. Para trabalhar >>> >> >>> >>>>>>>> com >>> >> >>> >>>>>>>> modelos >>> >> >>> >>>>>>>> de >>> >> >>> >>>>>>>> regressão heterocedásticos vou precisar de cálculo >>> >> >>> >>>>>>>> de >>> >> >>> >>>>>>>> inversas de >>> >> >>> >>>>>>>> matrizes para o cálculo da estrutura de covariância >>> >> >>> >>>>>>>> de >>> >> >>> >>>>>>>> tal >>> >> >>> >>>>>>>> estimador. >>> >> >>> >>>>>>>> [ ], >>> >> >>> >>>>>>>> Pedro Rafael Diniz Marinho. >>> >> >>> >>>>>>>> >>> >> >>> >>>>>>>> >>> >> >>> >>>>>>>> Em 9 de agosto de 2012 17:02, Pedro Rafael >>> >> >>> >>>>>>>> <[hidden email]> escreveu: >>> >> >>> >>>>>>>>> >>> >> >>> >>>>>>>>> Verdade Benilton inverter matrizes requer um custo >>> >> >>> >>>>>>>>> computacional >>> >> >>> >>>>>>>>> bastante elevado. Atualmente programo em C e >>> >> >>> >>>>>>>>> programei >>> >> >>> >>>>>>>>> muito >>> >> >>> >>>>>>>>> pouco >>> >> >>> >>>>>>>>> em >>> >> >>> >>>>>>>>> C++ por curiosidade. Você acreditar que códigos em >>> >> >>> >>>>>>>>> C++ >>> >> >>> >>>>>>>>> perdem >>> >> >>> >>>>>>>>> muito >>> >> >>> >>>>>>>>> desempenho em comparação à C considerando que a >>> >> >>> >>>>>>>>> programação >>> >> >>> >>>>>>>>> em >>> >> >>> >>>>>>>>> ambas >>> >> >>> >>>>>>>>> as linguagens sejam eficientes? Você tem boas >>> >> >>> >>>>>>>>> experiências >>> >> >>> >>>>>>>>> na >>> >> >>> >>>>>>>>> utilização de C++ para programação estatística e >>> >> >>> >>>>>>>>> para >>> >> >>> >>>>>>>>> uso >>> >> >>> >>>>>>>>> em >>> >> >>> >>>>>>>>> simulações? >>> >> >>> >>>>>>>>> >>> >> >>> >>>>>>>>> Gostei bastante dessa biblioteca que você me >>> >> >>> >>>>>>>>> passou, >>> >> >>> >>>>>>>>> muito >>> >> >>> >>>>>>>>> interessante. Não conhecia. A única biblioteca >>> >> >>> >>>>>>>>> para >>> >> >>> >>>>>>>>> álgebra >>> >> >>> >>>>>>>>> linear >>> >> >>> >>>>>>>>> livre que eu conhecia era a GSL. >>> >> >>> >>>>>>>>> >>> >> >>> >>>>>>>>> [ ], >>> >> >>> >>>>>>>>> Pedro Rafael Diniz Marinho. >>> >> >>> >>>>>>>>> >>> >> >>> >>>>>>>>> >>> >> >>> >>>>>>>>> Em 9 de agosto de 2012 15:58, beniltoncarvalho >>> >> >>> >>>>>>>>> [via >>> >> >>> >>>>>>>>> R-br] >>> >> >>> >>>>>>>>> <[hidden email]> escreveu: >>> >> >>> >>>>>>>>>> >>> >> >>> >>>>>>>>>> Eu ainda sou do time "se vc esta' invertendo >>> >> >>> >>>>>>>>>> matriz, >>> >> >>> >>>>>>>>>> entao >>> >> >>> >>>>>>>>>> vc >>> >> >>> >>>>>>>>>> esta' >>> >> >>> >>>>>>>>>> fazendo algo errado"... >>> >> >>> >>>>>>>>>> >>> >> >>> >>>>>>>>>> Em C++, vc vai querer olhar o que Armadillo tem a >>> >> >>> >>>>>>>>>> oferecer. >>> >> >>> >>>>>>>>>> >>> >> >>> >>>>>>>>>> b >>> >> >>> >>>>>>>>>> >>> >> >>> >>>>>>>>>> 2012/8/9 Pedro Rafael <[hidden email]>: >>> >> >>> >>>>>>>>>> >>> >> >>> >>>>>>>>>>> Pessoal gostaria de saber qual uma boa >>> >> >>> >>>>>>>>>>> biblioteca >>> >> >>> >>>>>>>>>>> livre >>> >> >>> >>>>>>>>>>> de >>> >> >>> >>>>>>>>>>> C >>> >> >>> >>>>>>>>>>> para >>> >> >>> >>>>>>>>>>> trabalhar com operações matriciais como inversas >>> >> >>> >>>>>>>>>>> e >>> >> >>> >>>>>>>>>>> produtos de >>> >> >>> >>>>>>>>>>> matrizes. Qualquer dica será interessante. >>> >> >>> >>>>>>>>>>> >>> >> >>> >>>>>>>>>>> [ ] Pedro Rafael Diniz Marinho. >>> >> >>> >>>>>>>>>>> _______________________________________________ >>> >> >>> >>>>>>>>>>> R-br mailing list >>> >> >>> >>>>>>>>>>> [hidden email] >>> >> >>> >>>>>>>>>>> >>> >> >>> >>>>>>>>>>> >>> >> >>> >>>>>>>>>>> >>> >> >>> >>>>>>>>>>> https://listas.inf.ufpr.br/cgi-bin/mailman/listinfo/r-br >>> >> >>> >>>>>>>>>>> Leia o guia de postagem >>> >> >>> >>>>>>>>>>> (http://www.leg.ufpr.br/r-br-guia) >>> >> >>> >>>>>>>>>>> e >>> >> >>> >>>>>>>>>>> forneça >>> >> >>> >>>>>>>>>>> código mínimo reproduzível. >>> >> >>> >>>>>>>>>> >>> >> >>> >>>>>>>>>> _______________________________________________ >>> >> >>> >>>>>>>>>> R-br mailing list >>> >> >>> >>>>>>>>>> [hidden email] >>> >> >>> >>>>>>>>>> >>> >> >>> >>>>>>>>>> >>> >> >>> >>>>>>>>>> https://listas.inf.ufpr.br/cgi-bin/mailman/listinfo/r-br >>> >> >>> >>>>>>>>>> Leia o guia de postagem >>> >> >>> >>>>>>>>>> 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